Discover the most starred and trending open source tools tagged with #bioinformatics.
The open-source AI research workbench for scientific research and agent workflows. Local-first, model-agnostic desktop app with extensible skills, MCP tools and connectors, Python/R execution and traceable artifacts for reproducible research on macOS, Windows and Linux.
The open-source AI workbench for scientific research
Single-cell analysis in Python. Scales to >100M cells.
Conda recipes for the bioconda channel.
Source code for JBrowse 2, a modern React-based genome browser
Py3plex - A multilayer complex network visualization and analysis library in python3
Protein and molecule viewer, editor, simulator
Differential analysis tool for coding-free researchers – instant statistical results and charts, ready for your lab meeting. Just unzip and run! No-coding!
reimplementation of BioPerl classes in Raku (e.g. the language formerly known as Perl6)
The Pharmacogenomic Clinical Annotation Tool
BioMCP: Biomedical Model Context Protocol
Open-source, local-first desktop AI research workbench for scientific computing with Python/R, MCP bioinformatics tools, SSH/WSL/GPU runtimes, and OpenAI/Anthropic models.
Aggregate results from bioinformatics analyses across many samples into a single report.