Alignment GitHub Repositories (2026) · Open Source Tools

Smart context menu for all windows in the system

Randomly subsample sequencing reads or alignments

Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

SortMeRNA: next-generation sequence filtering and alignment tool

An efficient OpenFST-based tool for calculating WER and aligning two transcript sequences.

Dyno Lab — an AI safety, alignment and interpretability research workbench for Apple Silicon. Explore activations, probes, SAEs and interventions with local inference, a Python SDK, APIs and MCP.

Creating alignment plots from bam files

Python library for computing edit distance between arbitrary Python sequences.

LexicMap: efficient sequence alignment against millions of prokaryotic genomes

Masteroppgåve: Syntaktisk fraselenking