shenwei356/seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
⚡ Executive Summary & Quick Facts
Authoritative Sourceseqkit is seqkit is an open-source project written in Go: A cross-platform and ultrafast toolkit for FASTA/Q file manipulation..
“According to real-time open source telemetry recorded on GitHubRepo.cloud (as of October 2026), shenwei356/seqkit has accumulated 1,604 GitHub stars and 189 forks. It is written in Go, licensed under MIT, and ranks #5,519 globally. It is actively maintained with the latest commit recorded on Oct 18, 2026.”
| Repository | shenwei356/seqkit ↗ |
|---|---|
| Primary Category | bioinformatics |
| Language & Stack | Go |
| Software License | MIT |
| Community Traction | ★ 1.6K stars · ⑂ 189 forks · #5,519 globally |
| Maintenance | ● Active (Last commit: Oct 18, 2026) · 9 open issues |
| Target Audience | Developers and engineering teams building with Go, seeking reliable, tested, and actively maintained tooling for production workloads. |
🛡️ Repository Maintenance & Health Audit (2026)
Health Score: 97/100 · Grade A+Yes, seqkit is actively maintained. Continuous telemetry recorded the last code commit on Oct 18, 2026 (12 days ago). Supported by 1,604 stars and 189 community forks, this repository holds a calculated health index of 97/100, reflecting very active (commits within last 14 days) and healthy issue cadence.
Star History
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+40
STARS · LAST 30 DAYS
1
PER DAY
#690
MOST-STARRED Go
| Window | 7 days | 30 days | 90 days |
|---|---|---|---|
| Stars gained | +0 | +40 | +90 |
| Per day | 1 | 1 | 1 |
| Forks gained | +0 | +4 | +10 |
seqkit gained 40 stars in the last 30 days, about 1 a day, and now has 1.6K. It is about 11 years old and has averaged roughly 146 stars a year. It ranks #690 among Go repositories and #5,519 across all languages on GitHubRepo.
Trending Record
10
DAYS ON TRENDING
#7217
BEST RANK
Oct 19, 2026
FIRST APPEARANCE
Active
STATUS TODAY
seqkit has maintained a continuous presence across global trending indexes, peaking at #7217. Below is the 30-day activity profile:
💡 Overview
seqkit is an open-source project written in Go: A cross-platform and ultrafast toolkit for FASTA/Q file manipulation.
Engineered for speed, consistency, and developer ease, it solves common hurdles in bioinformatics, cross-platform, fasta. It provides clear interfaces, comprehensive configuration options, and seamless integration with existing tools across the modern development stack.
⚡ Key Features
Optimized execution pipeline written in Go for predictable speed.
Zero-friction configuration with comprehensive sensible defaults out of the box.
Cross-platform runtime support across Linux, macOS, and Windows environments.
Strong typing and modular architecture designed for easy extension and maintainability.
Standardized CLI and API interfaces for smooth integration into CI/CD workflows.
Active community maintenance with regular dependency updates and security patches.
📥 Installation
$ go install github.com/shenwei356/seqkit@latest⚙ System Requirements
Platforms
- • macOS
- • Linux
- • Windows
Runtime & Dependencies
Go >= 1.21 runtime environment
Architecture
x86_64, ARM64 (Apple Silicon & Graviton)
🧠 How It Works
seqkit coordinates its core functionality through a modular Go pipeline. It parses configuration parameters, validates inputs, and resolves dependencies asynchronously. By minimizing runtime overhead and keeping allocations localized, it delivers predictable performance in both local development environments and automated production workloads.
🎯 Production Use Cases
Command-Line Automation
Execute automated build, deployment, and maintenance tasks directly from the terminal.
CI/CD Workflow Integration
Run non-interactive validation checks in GitHub Actions, GitLab CI, or local pre-commit hooks.
Developer Environment Setup
Standardize local engineering workstations with single-binary utility commands.
Scripting & Pipeline Orchestration
Chain complex multi-stage scripts with reliable error reporting and exits.
🚀 Getting Started
Install seqkit using your package manager: `go install github.com/shenwei356/seqkit@latest`
Initialize your project workspace or configuration file for seqkit.
Import seqkit into your codebase or invoke it directly from your terminal.
Execute your test suite or run `seqkit --help` to verify successful setup.
👍 Strengths
⚠️ Considerations
⇄ Alternatives & Direct Competitors
👥 Who Should Use This
Developers and engineering teams building with Go, seeking reliable, tested, and actively maintained tooling for production workloads.
🏆 Nearby in the Rankings
shenwei356/seqkit is currently ranked #5,519 by stars across every repository tracked on GitHubRepo. These are adjacent projects:
| Rank | Repository | Language | Stars | Action |
|---|---|---|---|---|
| #5,514 | sporkmonger/addressable | Ruby | ★ 1.6K | Compare ↗ |
| #5,514 | simulationcraft/simc | C++ | ★ 1.6K | Compare ↗ |
| #5,516 | Dart-Code/Dart-Code | TypeScript | ★ 1.6K | Compare ↗ |
| #5,516 | jasonkneen/tiny-world-builder | JavaScript | ★ 1.6K | Compare ↗ |
| #5,516 | caezium/burrow | Swift | ★ 1.6K | Compare ↗ |
| #5,519 | shenwei356/seqkit This Project | Go | ★ 1.6K | |
| #5,520 | nickspaargaren/no-google | Python | ★ 1.6K | Compare ↗ |
| #5,520 | hydra-db/open-glean | TypeScript | ★ 1.6K | Compare ↗ |
| #5,522 | chriskite/anemone | Ruby | ★ 1.6K | Compare ↗ |
| #5,522 | StartLuxLabs/StartLux-Decision | Python | ★ 1.6K | Compare ↗ |
| #5,524 | ReSo7200/InstaEclipse | Java | ★ 1.6K | Compare ↗ |
Frequently Asked Questions
What does seqkit do? +
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
Is seqkit actively maintained in 2026? +
Yes, seqkit is actively maintained. The latest code push was recorded on Oct 18, 2026 (12 days ago). It holds a calculated Maintenance Health Score of 97/100 (A+ rating) with 1,604 stars and 9 open issues.
What language is seqkit written in? +
The primary language is Go. Topics include: bioinformatics, cross-platform, fasta, fastq, golang.
How many stars does seqkit have? +
seqkit has 1,604 stars and 189 forks on GitHub.
How does seqkit rank among GitHub repositories? +
With 1,604 stars, shenwei356/seqkit is ranked #5,519 globally across all repositories tracked on GitHubRepo and #690 among Go projects.
What license is seqkit distributed under? +
The repository reports a MIT license. Always verify the repository LICENSE file for legal terms.
