broadinstitute/gatk-sv
A structural variation pipeline for short-read sequencing
⚡ Executive Summary & Quick Facts
Authoritative Sourcegatk-sv is gatk-sv is an open-source project written in Python: A structural variation pipeline for short-read sequencing..
“According to real-time open source telemetry recorded on GitHubRepo.cloud (as of November 2026), broadinstitute/gatk-sv has accumulated 209 GitHub stars and 84 forks. It is written in Python, licensed under BSD-3-Clause, and ranks #18,900 globally. It is actively maintained with the latest commit recorded on Oct 16, 2026.”
| Repository | broadinstitute/gatk-sv ↗ |
|---|---|
| Primary Category | bioinformatics |
| Language & Stack | Python |
| Software License | BSD-3-Clause |
| Community Traction | ★ 209 stars · ⑂ 84 forks · #18,900 globally |
| Maintenance | ● Active (Last commit: Oct 16, 2026) · 136 open issues |
| Target Audience | Developers and engineering teams building with Python, seeking reliable, tested, and actively maintained tooling for production workloads. |
🛡️ Repository Maintenance & Health Audit (2026)
Health Score: 88/100 · Grade AYes, gatk-sv is actively maintained. Continuous telemetry recorded the last code commit on Oct 16, 2026 (28 days ago). Supported by 209 stars and 84 community forks, this repository holds a calculated health index of 88/100, reflecting regular maintenance (28 days ago) and healthy issue cadence.
Star History
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+10
STARS · LAST 30 DAYS
1
PER DAY
#2,501
MOST-STARRED Python
| Window | 7 days | 30 days | 90 days |
|---|---|---|---|
| Stars gained | +0 | +10 | +90 |
| Per day | 1 | 1 | 1 |
| Forks gained | +0 | +3 | +10 |
gatk-sv gained 10 stars in the last 30 days, about 1 a day, and now has 209. It is about 6 years old and has averaged roughly 35 stars a year. It ranks #2,501 among Python repositories and #18,900 across all languages on GitHubRepo.
Trending Record
23
DAYS ON TRENDING
#12291
BEST RANK
Oct 16, 2026
FIRST APPEARANCE
Active
STATUS TODAY
gatk-sv has maintained a continuous presence across global trending indexes, peaking at #12291. Below is the 30-day activity profile:
💡 Overview
gatk-sv is an open-source project written in Python: A structural variation pipeline for short-read sequencing.
Engineered for speed, consistency, and developer ease, it solves common hurdles in bioinformatics, genomics, structural-variants. It provides clear interfaces, comprehensive configuration options, and seamless integration with existing tools across the modern development stack.
⚡ Key Features
Optimized execution pipeline written in Python for predictable speed.
Zero-friction configuration with comprehensive sensible defaults out of the box.
Cross-platform runtime support across Linux, macOS, and Windows environments.
Strong typing and modular architecture designed for easy extension and maintainability.
Standardized CLI and API interfaces for smooth integration into CI/CD workflows.
Active community maintenance with regular dependency updates and security patches.
📥 Installation
$ pip install gatk-sv⚙ System Requirements
Platforms
- • macOS
- • Linux
- • Windows
Runtime & Dependencies
Python >= 3.9, pip, virtualenv
Architecture
x86_64, ARM64 (Apple Silicon & Graviton)
🧠 How It Works
gatk-sv coordinates its core functionality through a modular Python pipeline. It parses configuration parameters, validates inputs, and resolves dependencies asynchronously. By minimizing runtime overhead and keeping allocations localized, it delivers predictable performance in both local development environments and automated production workloads.
🎯 Production Use Cases
Production System Integration
Embed gatk-sv into Python backend services to handle core application logic.
CI/CD Automated Pipelines
Run automated validation, builds, and integration suites during deployments.
Developer Tooling & Workflows
Accelerate developer onboarding with pre-configured project utilities.
Open Source Extension
Fork and customize internal modules under the repository's open BSD-3-Clause license.
🚀 Getting Started
Install gatk-sv using your package manager: `pip install gatk-sv`
Initialize your project workspace or configuration file for gatk-sv.
Import gatk-sv into your codebase or invoke it directly from your terminal.
Execute your test suite or run `gatk-sv --help` to verify successful setup.
👍 Strengths
⚠️ Considerations
⇄ Alternatives & Direct Competitors
👥 Who Should Use This
Developers and engineering teams building with Python, seeking reliable, tested, and actively maintained tooling for production workloads.
🏆 Nearby in the Rankings
broadinstitute/gatk-sv is currently ranked #18,900 by stars across every repository tracked on GitHubRepo. These are adjacent projects:
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|---|---|---|---|---|
| #18,855 | AkariLabs/akari-video | JavaScript | ★ 210 | Compare ↗ |
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| #18,855 | boffti/starwire | JavaScript | ★ 210 | Compare ↗ |
| #18,900 | broadinstitute/gatk-sv This Project | Python | ★ 209 | |
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Frequently Asked Questions
What does gatk-sv do? +
A structural variation pipeline for short-read sequencing
Is gatk-sv actively maintained in 2026? +
Yes, gatk-sv is actively maintained. The latest code push was recorded on Oct 16, 2026 (28 days ago). It holds a calculated Maintenance Health Score of 88/100 (A rating) with 209 stars and 136 open issues.
What language is gatk-sv written in? +
The primary language is Python. Topics include: bioinformatics, genomics, structural-variants, structural-variation.
How many stars does gatk-sv have? +
gatk-sv has 209 stars and 84 forks on GitHub.
How does gatk-sv rank among GitHub repositories? +
With 209 stars, broadinstitute/gatk-sv is ranked #18,900 globally across all repositories tracked on GitHubRepo and #2,501 among Python projects.
What license is gatk-sv distributed under? +
The repository reports a BSD-3-Clause license. Always verify the repository LICENSE file for legal terms.
