broadinstitute/bdg-services
Utility classes for wrapping services or other interfaces around a Spark/ADAM cluster.
Developer Profile
broadinstitute
Discovered public repositories for broadinstitute in the GitHub catalog.
broadinstitute/dig-diabetes-portal
Diabetes portal for the Medical Population Genetics department at the Broad Institute
broadinstitute/scalacache
Simple caching in Scala
broadinstitute/apache2-onehealth
This is the OneHealth Apache 2.4 fork of the original Opscode apache2 cookbook
broadinstitute/picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
broadinstitute/cotton
A library of useful functions for managing deployments with Fabric.
broadinstitute/chef-docker
Chef Cookbook for Docker
broadinstitute/gamgee
A C++14 library for NGS data formats
broadinstitute/mysql
Development repository for Opscode Cookbook mysql
broadinstitute/htslib
C library for high-throughput sequencing data formats. This is the repository for any necessary gamgee-specific changes.
broadinstitute/chef-shibboleth_idp
Chef cookbook to install and configure the Shibboleth SAML IdP
broadinstitute/bdg-formats
Public repository.
broadinstitute/openldap
Development repository for Opscode Cookbook openldap
broadinstitute/sensu-community-plugins
Sensu community plugins & handlers, sharing is good.
broadinstitute/seqr
web-based analysis tool for rare disease genomics
broadinstitute/sensu-chef
Sensu Chef cookbook.
broadinstitute/java
Development repository for Opscode Cookbook java
broadinstitute/Squeryl
A Scala DSL for talking with databases with minimum verbosity and maximum type safety
broadinstitute/adam
A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
broadinstitute/lxc
Linux Containers via Chef
broadinstitute/cakephp
CakePHP: The Rapid Development Framework for PHP - Official Repository
broadinstitute/ohai
Ohai profiles your system and emits JSON
broadinstitute/cxowrapper
Wrapper for Python's cx_Oracle database API that returns results in a slightly more sane format.
broadinstitute/rigerj
Java implementation of RIGER and other gene enrichment methods, useful for RNAi and CRISPR screen analysis.
broadinstitute/uploader
A CakePHP plugin for file uploading and validating.
broadinstitute/GitDescribe-Maven-Plugin
Sets the maven attribute 'describe' to the current git describe output. Currently directly executes git describe, no JGit implementation yet.
broadinstitute/somatic-benchmark
Tools for comparing somatic variant calling tools.
broadinstitute/oncotator
Public repository.
broadinstitute/cmi-cas-rest-client
A RestClient for integrating with applications protected by CAS Single-Sign-On (http://www.jasig.org/cas)
broadinstitute/bits-chef-repo
BITS Chef Repository
broadinstitute/pilon
Pilon is an automated genome assembly improvement and variant detection tool
broadinstitute/mutect
MuTect -- Accurate and sensitive cancer mutation detection
broadinstitute/bioscala
Bioinformatics for the Scala programming language
broadinstitute/BARD
BioAssay Research Database
broadinstitute/vagrant
Public repository.
broadinstitute/xtermcolor
Python library for terminal color support (including 256-color support)
broadinstitute/wordpress-crowd-plugin
Crowd Authentication Plugin for Wordpress
broadinstitute/gdata-cli
tool to manipulate Google App domains from the command line