Top MEDICAL GitHub Repositories & Tools (2026)

DeepInverse: a PyTorch library for solving imaging inverse problems using deep learning

Medplum is a healthcare platform that helps you quickly develop high-quality compliant applications.

JEPA-Anything: Learning Predictive Models across Different Worlds

The most popular open source electronic health records and medical practice management solution.

Real-time multi-physics simulation with an emphasis on medical simulation.

MedTimer Android app

Knowledge-Aware machine LEarning (KALE): accessible machine learning from multiple sources for interdisciplinary research, part of the 🔥PyTorch ecosystem. ⭐ Star to support our work!

The Open Source Computer Aided Dispatch (CAD), Personnel, Shift Management, Automatic Vehicle Location (AVL) and Emergency Management Platform that powers Resgrid.com

Differential analysis tool for coding-free researchers – instant statistical results and charts, ready for your lab meeting. Just unzip and run! No-coding!

Interactive 3D atlas of oral and maxillofacial anatomy for dental education. 643 BodyParts3D meshes plus 77 schematic nerve, vessel, gland, sinus and joint structures the source dataset omits, fitted to this skull's own landmarks.

BioMCP: Biomedical Model Context Protocol