lh3/thesis
PhD thesis
Developer Profile
lh3
Discovered public repositories for lh3 in the GitHub catalog.
lh3/samtools-legacy
For testing only. DON'T USE!
lh3/fermi2
Public repository.
lh3/ropebwt2
Incremental construction of FM-index for DNA sequences
lh3/alktk
Failed experiment. Archived for a historical record.
lh3/mem-paper
Manuscript for BWA-MEM
lh3/bcf2
Experimental bcftools port to support BCF2; DEPRECATED by htslib and htsbox
lh3/fastARG
Fast heuristic ARG construction
lh3/ropebwt
Public repository.
lh3/fermi-paper
The first fermi paper (Li, 2012)
lh3/seqtk
Toolkit for processing sequences in FASTA/Q formats
lh3/fermi
A WGS de novo assembler based on the FMD-index for large genomes
lh3/bioawk
BWK awk modified for biological data
lh3/readfq
Fast multi-line FASTA/Q reader in several programming languages
lh3/smtl-paper
Samtools statistics paper (Li, 2011)
lh3/lh3.github.com
Public repository.
lh3/treebest
TreeBeST: Tree Building guided by Species Tree
lh3/sff2fastq
extract 454 Genome Sequencer reads from a SFF file and convert them into a FASTQ formatted output
lh3/samtools
This is *NOT* the official repository of samtools.
lh3/psmc
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
lh3/wgsim
Reads simulator
lh3/foreign
Modified or extracted from other programs
lh3/misc
Useful small programs
lh3/bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)