What are the best Scanpy repositories on GitHub?

The top-ranked Scanpy open source repositories include scverse/scanpy, pwwang/scplotter, NygenAnalytics/CyteType, tracked and evaluated by community adoption, stars, and code commits.

How do I find trending Scanpy open source tools?

Browse this curated Scanpy directory to monitor real-time GitHub star velocity, latest code releases, and rising developer tools updated daily.

Are Scanpy GitHub repositories free and open source?

Most Scanpy projects listed here are distributed under open source licenses (such as MIT, Apache 2.0, or GPL). Always check individual project repositories for exact license terms.

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Scanpy GitHub Repositories (2026) · Open Source Tools

Discover the best Scanpy open source repositories on GitHub. Explore trending tools, live star counts, source code, and developer projects updated daily.

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3 matching projects · updated Nov 14, 2026 How we rank ↗

#1 TRENDING scverse/scanpy Python 2017

Single-cell analysis in Python. Scales to >100M cells.

◇ anndata ◇ bioinformatics ◇ data-science ◇ machine-learning

800 ↑ +5 today

2.6K

#2 TRENDING pwwang/scplotter HTML 2024

scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial data in an easy and efficient way.

◇ giotto ◇ scanpy ◇ seurat ◇ single-cell-analysis

33 ↑ +1 today

333

#3 TRENDING NygenAnalytics/CyteType Python NEW 2025

Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

◇ agentic-ai ◇ anndata ◇ cell-state-prediction ◇ celltype-annotation

15 ↑ +1 today

140

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Scanpy GitHub Repositories (2026) · Open Source Tools

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