Neuroscience GitHub Repositories (2026) · Open Source Tools

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

Deep learning software to decode EEG, ECG or MEG signals

A curated list of fruit fly connectome projects: MaleCNS, FlyWire, brain simulations, embodied models, games, and research tools.

For running psychology and neuroscience experiments

Mother of All BCI Benchmarks

Python suite for neuroscience research across all modalities.

Raise a neural network as a pet - a transparent cognitive sandbox where digital squids learn, grow, and rewire via Hebbian learning & Neurogenesis

Connectome Workbench

PyTorch Connectomics: segmentation toolbox for EM connectomics

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

BioDynaMo is a high-performance and modular, agent-based simulation platform.

Anima: a Claude Code skill that turns a biology idea into an interactive, sourced, isometric figure. Dopamine receptors, stimulants, addiction circuits, semaglutide.