sharpton/meta-qc
A QC pipeline for shotgun metagenomic data derived from host-associated microbial communities (i.e., microbiomes)
Developer Profile
sharpton
Discovered public repositories for sharpton in the GitHub catalog.
sharpton/metatrans
Public repository.
sharpton/quickclass
Conducts a quick and dirty classification of DNA sequences into protein families. Takes demultiplexed Illumina fastq data, organizes it into sample categories, pushes the data to an SGE cluster, process it with LAST using a precomputed protein family database, and parses the result to identify the number of copies of each family in each sample.
sharpton/SRAdb_tools
Public repository.
sharpton/MicrobeDB
Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI
sharpton/Sfam_updater
Code and versioning notes for the Sfams protein families.
sharpton/shotmap
A Shotgun Metagenome Annotation Pipeline
sharpton/ModAlign
Public repository.
sharpton/MRC
Public repository.
sharpton/pplacer
Phylogenetic placement tool
sharpton/PhylOTU
PhylOTU identifies microbial OTUs from metagenomic data