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Catalog / sharpton / PhylOTU
Public GitHub Catalog Discovered Sep 24, 2026

sharpton / PhylOTU

PhylOTU identifies microbial OTUs from metagenomic data

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#894365GitHub System ID
sharptonOrganization / User
PublicVisibility
ActiveCatalog Status

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A QC pipeline for shotgun metagenomic data derived from host-associated microbial communities (i.e., microbiomes)

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Conducts a quick and dirty classification of DNA sequences into protein families. Takes demultiplexed Illumina fastq data, organizes it into sample categories, pushes the data to an SGE cluster, process it with LAST using a precomputed protein family database, and parses the result to identify the number of copies of each family in each sample.

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