RobersonLab/paired_end_demux
Illumina FASTQ files as input and splits into individual indexed samples.
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RobersonLab
Discovered public repositories for RobersonLab in the GitHub catalog.
RobersonLab/single_end_demux
Python script for demultiplexing single-end sequencing into individual FASTQ files by index.
RobersonLab/RobersonLab.github.io
Lab static site
RobersonLab/fastq_scrubber
Really hacky way to remove adapters from NGS while keeping reads in order. Recommend alt strategy with cutadapt instead.
RobersonLab/compare_order
Compare the read ids between two Illumina FASTQ or SCARF files to confirm reads are in sync.
RobersonLab/ilmn_format_converter
C++ method to convert ILMN+64 files between SCARF and FASTQ formats.
RobersonLab/fastqSol2Phred
Simple program that converts FASTQ files in Solexa quality offset (QUAL+64) to a FASTQ file with Phred/Sanger offset (QUAL+33).
RobersonLab/ilmn_beadarray_ttests
Functions that allow direct differential expression testing of 1 versus 1 array using the average intensities, bead count, standard errors and detection p-values. Requires beadarray.
RobersonLab/snpduoweb
Repository for the web-based version / visualization engine for the SNPduoWeb tool. Designed to visualize identity-by-state in high-density snp data. Originally developed in the lab of Dr. Jonathan Pevsner. The newest versions are Roberson Lab adaptations.
RobersonLab/snpduo
Repository for the snpduo command-line tool. The tool is designed to calculate identity-by-state in large SNP genotyping datasets. Originally developed in the lab of Dr. Jonathan Pevsner at the Kennedy Krieger Institute in Baltimore. Publication PMID: 19696932.