RobersonLab/paired_end_demux
Illumina FASTQ files as input and splits into individual indexed samples.
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Discovered Sep 30, 2026
RobersonLab / single_end_demux
Python script for demultiplexing single-end sequencing into individual FASTQ files by index.
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RobersonLab/fastq_scrubber
Really hacky way to remove adapters from NGS while keeping reads in order. Recommend alt strategy with cutadapt instead.
RobersonLab/compare_order
Compare the read ids between two Illumina FASTQ or SCARF files to confirm reads are in sync.