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Catalog / zhouhufeng / MACS
Public GitHub Catalog Discovered Sep 26, 2026

zhouhufeng / MACS

MACS -- Model-based Analysis of ChIP-Seq

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zhouhufengOrganization / User
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zhouhufeng/picard

A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.

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zhouhufeng/tadbit

TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models

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zhouhufeng/gatk

GATK Official Release Repository: contains the core MIT-licensed GATK framework, free for all uses

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