zhouhufeng/bbcflib
Internal utility modules for the BBCF
Developer Profile
zhouhufeng
Discovered public repositories for zhouhufeng in the GitHub catalog.
zhouhufeng/Vardoop
A parallel variant calling tool on Hadoop
zhouhufeng/picard
A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.
zhouhufeng/tadbit
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
zhouhufeng/gatk
GATK Official Release Repository: contains the core MIT-licensed GATK framework, free for all uses
zhouhufeng/Caffo-Coursera
A repository of my Coursera latex code and notes
zhouhufeng/POSA-14
This repository contains assignments and examples for the 2014 offering of the POSA MOOC (see www.coursera.org/course/posa for more information)
zhouhufeng/pipeline
bradner lab computation pipeline scripts
zhouhufeng/IGV
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
zhouhufeng/MACS
MACS -- Model-based Analysis of ChIP-Seq
zhouhufeng/Algo
Public repository.