xtmgah/gqt
A genotype query interface.
WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery
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A genotype query interface.
The JunctionSeq R package is a powerful tool for testing differential junction usage (DJU) in next-generation, high-throughput RNA-Seq experiments.
Graph-based alignment (Hierarchical Graph FM index)
Quality of RNA-Seq Toolset