xtmgah/JunctionSeq
The JunctionSeq R package is a powerful tool for testing differential junction usage (DJU) in next-generation, high-throughput RNA-Seq experiments.
A genotype query interface.
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The JunctionSeq R package is a powerful tool for testing differential junction usage (DJU) in next-generation, high-throughput RNA-Seq experiments.
Graph-based alignment (Hierarchical Graph FM index)
Quality of RNA-Seq Toolset
Near-optimal RNA-Seq quantification