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Catalog / tamuri / treesub
Public GitHub Catalog Discovered Sep 26, 2026

tamuri / treesub

A small program that glues together other programs allowing a user to input a codon alignment in FASTA format and produce an annotated phylogenetic tree showing which substitutions occurred on a given branch. Originally written for colleagues at the MRC NIMR.

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This repository is cataloged as part of our automated global GitHub synchronization. Full telemetry, velocity snapshots, and code summaries are scheduled for continuous enrichment.

#7797645GitHub System ID
tamuriOrganization / User
PublicVisibility
ActiveCatalog Status

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tamuri/swmutsel

Implementation of the site-wise mutation-selection model (swMutSel) described in Tamuri et al. (2012, 2014) , and Tamuri and dos Reis (2022)

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tamuri/tdg09

Software and data used in Tamuri AU, dos Reis M, Hay AJ, Goldstein RA (2009) Identifying Changes in Selective Constraints: Host Shifts in Influenza. PLoS Comput Biol 5(11): e1000564 doi:10.1371/journal.pcbi.1000564

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tamuri/tdg12

This program is no longer being updated. Please use the implementation at https://github.com/tamuri/swmutsel

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