tamuri/lbfgsb_wrapper
Java wrapper for the Fortran L-BFGS-B algorithm
Developer Profile
tamuri
Discovered public repositories for tamuri in the GitHub catalog.
tamuri/swmutsel
Implementation of the site-wise mutation-selection model (swMutSel) described in Tamuri et al. (2012, 2014) , and Tamuri and dos Reis (2022)
tamuri/treesub
A small program that glues together other programs allowing a user to input a codon alignment in FASTA format and produce an annotated phylogenetic tree showing which substitutions occurred on a given branch. Originally written for colleagues at the MRC NIMR.
tamuri/tdg09
Software and data used in Tamuri AU, dos Reis M, Hay AJ, Goldstein RA (2009) Identifying Changes in Selective Constraints: Host Shifts in Influenza. PLoS Comput Biol 5(11): e1000564 doi:10.1371/journal.pcbi.1000564
tamuri/tdg12
This program is no longer being updated. Please use the implementation at https://github.com/tamuri/swmutsel