rpique/rpique.github.io
rpique website
Burrow-Wheeler Aligner
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rpique website
Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
Public repository.