rpique/rpique.github.io
rpique website
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rpique
Discovered public repositories for rpique in the GitHub catalog.
rpique/QuASAR
Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data
rpique/pysam
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
rpique/fig1
Public repository.
rpique/fgwas
Functional genomics and genome-wide association studies
rpique/bedtools2
A powerful toolset for genome arithmetic.
rpique/GADA
Fast segmentation tool for copy number detection analysis in C
rpique/klib
A standalone and lightweight C library
rpique/samtools
Public repository.
rpique/dx-toolkit
DNAnexus platform client libraries.
rpique/pbsmake
Make-like wrapper for job scheduling on PBS systems.
rpique/cutadapt
cutadapt removes adapter sequences from DNA sequencing reads
rpique/MACS
MACS -- Model-based Analysis of ChIP-Seq
rpique/node
evented I/O for v8 javascript
rpique/etherpad-lite
Really real-time collaborative document editing for the rest of us
rpique/fastq-tools
Small utilities for working with fastq sequence files.
rpique/bwa
Burrow-Wheeler Aligner
rpique/StarCluster
StarCluster is a utility for creating and managing computing clusters hosted on Amazon's Elastic Compute Cloud (EC2).
rpique/UCSC-Browser-code-add-ons
My small additions to the UCSC code