maxbiostat/beast-mcmc
Bayesian Evolutionary Analysis Sampling Trees
Code I have developed for my research and teaching over the years.
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Bayesian Evolutionary Analysis Sampling Trees
rSPR is a software package for calculating rooted subtree-prune-and-regraft distances and rooted agreement forests.
Bits and pieces on (logarithmic) opinion pooling
A collection of shell, perl and R scripts for quantifying MCMC exploration of subtree prune-and-regraft tree space in posterior distributions from MCMC phylogenetic packages.