maxbiostat/beast-mcmc
Bayesian Evolutionary Analysis Sampling Trees
Discovered public repositories for maxbiostat in the GitHub catalog.
Bayesian Evolutionary Analysis Sampling Trees
rSPR is a software package for calculating rooted subtree-prune-and-regraft distances and rooted agreement forests.
Bits and pieces on (logarithmic) opinion pooling
A collection of shell, perl and R scripts for quantifying MCMC exploration of subtree prune-and-regraft tree space in posterior distributions from MCMC phylogenetic packages.
R code prototypes for DPP gibbs sampler for mixtures of normals.
Using complex networks for knwoledge discovey in (viral) sequence databases
Code I have developed for my research and teaching over the years.
PDFs of my articles, published, in press and unpublished. Preprints are available for the later two.
My curriculum vit\ae.
CTMC-based phylogeography simulator
Tracking the spread of Foot-and-Mouth Disease virus in South America