lydiasteiner/epimem
simulation program to simulate epigenetic memory using a hopfield network
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Discovered Sep 27, 2026
lydiasteiner / aerts-exercises-leipzig
Database and visualization exercises for Leipzig course "Programming for Evolutionary Biology"
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lydiasteiner/DomainEvolution
skript cellection for analyzing domain evolution
lydiasteiner/mpcounts
Reconstruction of domain/gene counts using the maximum parsimony method: It requires that the tree exists as directory structure. The counts fo the leave nodes are expected to be in a file called mpcounts in the leave node's directories. First line is a header, first column contains the class name and the second column the counts of this class. So far, it reconstructs counts only for 10 clases (Wac,Wme,Wph,Wub,Rac,Rme,Rph,Eac,Eme,Eub). Any other class is ignored.