An assortment of scripts to help process and automate various microbiome and metagenomic bioinformatic tools.
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Data and code associated with Snider, Venkiteswaran, Schiff, and Spoelstra. 2015. From the Ground Up: Global Nitrous Oxide Sources are Constrained by Stable Isotope Values. PLoS ONE 10(3): e0118954. doi: 10.1371/journal.pone.0118945
Distributed String Mining Framework
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
PathRings--A web-version of biological data visualization framework