hjanime/Genesmith
Gene finder mixing genomic and protein information
Developer Profile
hjanime
Discovered public repositories for hjanime in the GitHub catalog.
hjanime/StochHMM
A Hidden Markov Model Application and C++ Library for Rapid and Flexible Development of HMMs
hjanime/bwtool
A tool for bigWig files.
hjanime/NGStoolbox
scripts used for NGS data analysis
hjanime/ngs-1
Next Generation Sequencing Pipeline
hjanime/CSI
The scripts dump for the RNA-Seq and Chip-exo projects.
hjanime/MACS
MACS -- Model-based Analysis of ChIP-Seq
hjanime/GRO-seq
GROSeq, RNASeq, Exome Sequencing.
hjanime/cgat
CGAT - Computational Genomics Analysis Tools
hjanime/seqtk
Toolkit for processing sequences in FASTA/Q formats
hjanime/galaxytools
Galaxy Tool wrappers
hjanime/deepTools
Tools to process and analyze deep sequencing data.
hjanime/UDR
A UDT wrapper for rsync that improves throughput of large data transfers over long distances.
hjanime/bcftools
This is the official development repository for BCFtools
hjanime/miRspring
Pipeline scripts for creating a miRspring (miRNA sequence profiling) document.
hjanime/pyNGSQC
A pure-python next-gen sequencing quality control library, and soon to be command line tool
hjanime/RevoEnhancements
Enhancements to Revolution R Enterprise's RevoScaleR
hjanime/ENA
Ensemble Network Aggregation
hjanime/CLIP-Seq
Public repository.
hjanime/clipper
A tool to identify CLIP-seq peaks
hjanime/Spanki
Splicing analysis toolkit for RNA-SEQ
hjanime/biofab-web
BIOFAB web app. Web services and internal data management and analysis tools.
hjanime/rnaseqlib
RNA-Seq pipeline
hjanime/SingleCellAssay
Tools and methods for analysis of single cell assay data in R
hjanime/wigreader
Some C scripts for handling wiggle files
hjanime/metAMOS
A metagenomic assembly pipeline for AMOS
hjanime/seqAnalysis
Utils for processing sequencing data
hjanime/search.bioconductor.jp
Bioconductor Code Search for Package Developers
hjanime/G-NEST
The Gene NEighborhood Scoring Tool (G-NEST) combines genomic location, gene expression, and evolutionary sequence conservation data to score putative gene neighborhoods across all window sizes. Primary author of final code = William F. Martin. Example data files are in the separate repository G-NEST_examples:
hjanime/gemini
a lightweight db framework for disease and population genetics.
hjanime/metaseq
Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
hjanime/scurgen
A tool for exploring genomic data with space filling curves
hjanime/tabutils
Utility methods for dealing with tab-delimited files
hjanime/MicrobeDB
Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI
hjanime/MF
nimfa - A Python Library for Nonnegative Matrix Factorization Techniques
hjanime/cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
hjanime/gensim
Vector Space Modelling for Humans
hjanime/bein-chipseq-tutorial
A toy example for teaching Bein
hjanime/LogicLDA
Topic modeling with first-order logic (FOL) domain knowledge
hjanime/rdbio-scripts
Unorganized collection of bioinformatics scripts and utilities
hjanime/bbcfutils
Collection of stand-alone tools
hjanime/RNASEQR
RNASEQR - A streamlined and accurate RNA-seq sequence analysis program
hjanime/gMiner
Manuiplations and statistics on genomic data
hjanime/pytools
some general useful python tools for genomics
hjanime/RNA-seq-Graph
RNA-seq Graph Builder is a method to reconstruct the Isoform Graph of a gene from RNA-seq data, without the genome information, where such a graph is a representation of the variants of alternative splicing of the gene structure.
hjanime/PIntron
A novel pipeline for gene-structure prediction based on spliced alignment of transcript sequences (ESTs and mRNAs) against a genomic sequence
hjanime/vdj
python package for working with immune receptor sequence data
hjanime/phip-stat
Analysis tools for PhIP-seq experiments
hjanime/MISO
MISO
hjanime/WigglePlotR
A tool to create wiggle plots from RNA-Seq in R.