gkno/wham
All-things-BAM
Mirror of SeqAn SVN for use in gkno package
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All-things-BAM
Public repository.
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
Mirror of Genome STRiP from the Broad Institute