etal/cnvkit-dnanexus
DNAnexus app for CNVkit
Consensus Multiple Alignment format, using Biopython classes.
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DNAnexus app for CNVkit
Validated, scalable, community developed variant calling and RNA-seq analysis
Tumor Heterogeneity Analysis (THetA) is an algorithm that estimates the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data.
Example datasets for CNVkit (http://github.com/etal/cnvkit)