etal/bcbio-nextgen
Validated, scalable, community developed variant calling and RNA-seq analysis
Example datasets for CNVkit (http://github.com/etal/cnvkit)
This repository is cataloged as part of our automated global GitHub synchronization. Full telemetry, velocity snapshots, and code summaries are scheduled for continuous enrichment.
Validated, scalable, community developed variant calling and RNA-seq analysis
Tumor Heterogeneity Analysis (THetA) is an algorithm that estimates the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data.
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
Identify potential tumor suppressors from the relative burden of loss-of-function mutations.