astatham/snappymeth
Call allele-specific methylation from whole genome bisulfite sequencing data
significance testing over interval overlaps
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Call allele-specific methylation from whole genome bisulfite sequencing data
Small utility to extract reads from a BAM file that cover a specified SNP or deletion, separated by allele.
Step-by-step guide to the analysis of NOMe-seq data
align BS-Seq reads and extract methylation without intermediate temp files