astatham/snappymeth
Call allele-specific methylation from whole genome bisulfite sequencing data
Developer Profile
astatham
Discovered public repositories for astatham in the GitHub catalog.
astatham/splitSNP
Small utility to extract reads from a BAM file that cover a specified SNP or deletion, separated by allele.
astatham/NOMe-seq-analysis
Step-by-step guide to the analysis of NOMe-seq data
astatham/poverlap
significance testing over interval overlaps
astatham/bwa-meth
align BS-Seq reads and extract methylation without intermediate temp files
astatham/BiSeq
My fork of the BiSeq bioconductor package (forked from version 1.3.8, revision 86606)
astatham/PlayLast.fm
RhythmBox plugin allowing to create playlist based on a Last.fm play log
astatham/gimmemotifs
GimmeMotifs is a de novo motif prediction pipeline, especially suited for ChIP-seq datasets. It incorporates several existing motif prediction algorithms in an ensemble method to predict motifs and clusters these motifs using the WIC similarity scoring metric.