alimanfoo/veff
variant effect prediction
A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.
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variant effect prediction
Analyse genetic variation.
Examples and utilities for calling copy number variations (CNVs) from high throughput sequence data using a hidden Markov model (HMM)
Extended arrays for working with scientific datasets in Python. http://xray.readthedocs.org