alexholehouse/mdtraj
A modern, open library for the analysis of molecular dynamics trajectories
Python API to access ProteomeScout flatfiles [proteomescout.wustl.edu]
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A modern, open library for the analysis of molecular dynamics trajectories
Robust parsing API for PDB files
Take a PDB file and spit out protein sequence in 3 or 1 letter format
Allows mutation of a specific residue in a .xtc trajectory file to glycine