alexholehouse/proteomeScoutAPI
Python API to access ProteomeScout flatfiles [proteomescout.wustl.edu]
Developer Profile
alexholehouse
Discovered public repositories for alexholehouse in the GitHub catalog.
alexholehouse/mdtraj
A modern, open library for the analysis of molecular dynamics trajectories
alexholehouse/pdbParser
Robust parsing API for PDB files
alexholehouse/pdb2fasta
Take a PDB file and spit out protein sequence in 3 or 1 letter format
alexholehouse/trjmutator
Allows mutation of a specific residue in a .xtc trajectory file to glycine
alexholehouse/autoQ
Wrapper around PBS/SGE type queuing systems to automatically resubmit jobs
alexholehouse/pyTANGO
Python wrapper around the aggregation propensity prediction tool TANGO for Linux usage
alexholehouse/TranTools
Collection of Python command line tools for exploring and describing Fortran code
alexholehouse/systools
General system tools
alexholehouse/biotools
Collection of bioinformatics tools
alexholehouse/cli
My command line interface tools for python projects
alexholehouse/dotfiles
Public repository.
alexholehouse/Geeneus
Simple base-type based API for the NCBI databases
alexholehouse/l1ktools
Software tools to analyze data produced from the L1000 project
alexholehouse/gromacs
Public/backup repository of the gromacs molecular simulation toolkit
alexholehouse/pufferfish
Super simple, super lightweight dna compression tool
alexholehouse/spark
▁▂▃▅▂▇ in your shell.
alexholehouse/autoClasser
Make header and class files using a default template. Save ~ 1 min per class...
alexholehouse/unpack
A simple perl script which provides a command line interface unifying all the various unpacking mechanisms for common compression/archive formats on Linux
alexholehouse/MATLAB_parameter_estimation
Part of my dissertation project, a selection of MATLAB scripts for generating and evaluating parameters based on empirical data originally collected by Hendriks et al. This is NOT GENERIC, but specific for a project
alexholehouse/SBMLIntegrator
SBML model editor and integrator - *very* much in alpha