LeeKamentsky/scikit-image
Image Processing SciKit (Toolbox for SciPy)
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
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Image Processing SciKit (Toolbox for SciPy)
CellH5 is an HDF5 data format for cell-based assays in high-throughput microscopy, which stores high-dimensional image data along with inter-object relations in graphs.
A Java/swing backend for Matplotlib using the javabridge
A GUI tool that quantifies the amount of stain in organelles segmented out of a 3D stack.