The K tools
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Open Source HTML5 Puzzle Game Engine. This fork messes with the replay/autoplay features to make it easier to integrate with Gamalyzer or other design assistance tools. The analyzer branch also has some automated analysis features!
Public repository.
General-purpose game trace visualization and descriptive analysis. Reads in trace files and spits out pretty pictures via a web server.
(ASP versions of) Decision Modeling & Optimization in Game Design.