Honglongwu/lncrscan
Automatically exported from code.google.com/p/lncrscan
An attempt to help anyone interested in using Perl for Bioinformatics
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Automatically exported from code.google.com/p/lncrscan
Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portrait). A final heuristic makes Annocript able to identify putative long non-coding RNAs among your transcripts.
My blogs
make complex heatmaps as well as self define annotation graphics