uhjish/inbedby11.github.com
inbedby11.github.com
Developer Profile
uhjish
Discovered public repositories for uhjish in the GitHub catalog.
uhjish/snpdecomp
Decompose SNPs into haplotype blocks and perform linkage disequilibrium analysis (HDF5, Python)
uhjish/seqsnp_browser
JS UI to browse the SNPs found in a genome sequencing run
uhjish/geneius
build an annotation library for genomic data -- command line or web
uhjish/wdjet
the all-seeing eye. a RMI-service based SWING app (client/server) for genomics analysis using hocuslocus/interlocutor
uhjish/interlocutor
locus intersection analysis to generate significantly associated annotation terms and gene regulatory networks
uhjish/hocuslocus
hocuslocus, thesis work on genomic coordinate systems for batch annotation mining
uhjish/edgeroll
demo out some dashboarding using bottlepy and d3.js, dc.js
uhjish/rongrem
hotel review analysis
uhjish/seedsv
old-school php/javascript/sqlite3 based tool for paging/searching over tabular flatfiles
uhjish/luigi
Allows visualization of a DNA sequence with both positive and negative scores at a given base, for example sense and antisense coverage in sequencing. Shows a zoomable stacked bar graph for the scores, displays other features (ex: promoters, SNPs) as horizontal bars that can be clicked and zoomed into. Also shows the sequence relevant to the selection. Demo: Allows visualization of a DNA sequence with both positive and negative scores at a given base, for example sense and antisense coverage in sequencing. Shows a zoomable stacked bar graph for the scores, displays other features (ex: promoters, SNPs) as horizontal bars that can be clicked and zoomed into. Also shows the sequence relevant to the selection. Demo: http://biobits.net/luigi/
uhjish/tome
Provides basic support for exploring small-world graph properties for connected components of undirected graphs (clustering coef, avg path length, degree distribution) and provides novel algorithms for control-generation and significance analysis of subnetwork properties.
uhjish/bucketbrigade
Copy items in S3 buckets across AWS accounts easily simplifying ACL management.
uhjish/ipython_d3_mashup
just forked, planning to make some improvements ... when...?
uhjish/link
Link was designed to deal with the growing number of databases, apis and environments needed to grow a technology and a team. Link provides a simple way to configure and connect to all of these different technologies.