genomeannotation/no_bad_products
Cleans up annotation syntax to conform to NCBI standards
Developer Profile
genomeannotation
Discovered public repositories for genomeannotation in the GitHub catalog.
genomeannotation/HamstrFiltr
Start with a genome, single copy orthologs and SNPs; end with a list of the SNPpiest single copy ortholog exons in the genome
genomeannotation/OrthoMCL-docker
An OrthoMCL setup in a docker image
genomeannotation/unigener
Public repository.
genomeannotation/fasta_length
Generates sequence length histogram from several fastas
genomeannotation/seq_coverage
Calculates coverage of sequence across fasta files
genomeannotation/taskmaker
Helper program to create SGE job scripts
genomeannotation/FastaLocTable
Writes a table of fasta sequence bases at locations
genomeannotation/MoanaPipelines
Pipelines to analyze and correct reads, count kmers and assemble genomes -- meant to run on our local cluster
genomeannotation/biosoftnamegen
Generates Amazing Ideas for Bioinformatics Software Projects
genomeannotation/genomeannotation.github.io
Public repository.
genomeannotation/yomama
Deprimers your things
genomeannotation/contigger
Splits your scaffolded fasta into contigs and produces a gap file for use with GAA
genomeannotation/transvestigator
Validates transcriptome and prepares it for submission to the NCBI
genomeannotation/capn_primer
Designs and validates primers, sails the seven seas.
genomeannotation/yomama_old
Sequence debarcoder, delinker, deprimerer and SNP caller in the spirit of MOTHUR
genomeannotation/snp_explorer
Console-based Python program for filtering vcf files
genomeannotation/phred
Translates Phred scores from ASCII to int and back again :)
genomeannotation/pileup_analyzer
Python program to do wizardly stuff to samtools mpileup output
genomeannotation/agp_tweaker
An amazing lil' Python utility to shift boundaries between given scaffold-contigs and fragments in an .agp file
genomeannotation/GAG
Generates an NCBI .tbl file of annotations on a genome.
genomeannotation/ScaffoldsToScaffoldContigs
Command line Java tool to map a scaffolded genome to a scaffold-contigged version
genomeannotation/bioinformatics-tools
Awk, bash, python scripts for processing NGS data