dmlond/mongo_agent_seed_reference
extends dmlond/bwa_alignment with an agent to update the mongo task with the reference and build
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dmlond
Discovered public repositories for dmlond in the GitHub catalog.
dmlond/mongo_agent_watch_alignment
containerized application that can be run after seed to watch the progress of an alignment through its logs.
dmlond/mongo_agent_seed_alignment
simple script to seed the demo alignment of the plasmodium data to the plasmodium reference
dmlond/mongo_agent_merge_bam
Ruby MongoAgent::Agent that monitors for merge_bam_agents tasks, and merges the specified subset_bams into a single bam file
dmlond/mongo_agent_merge_monitor
extends dmlond/bwa_samtools_base with a Ruby script that monitors MongoAgent::Agent alignment_agent tasks in the queue to determine when to create a new merge_bam_agent task
dmlond/mongo_agent_align_subset
Ruby MongoAgent::Agent wrapper for dmlond/bwa_aligner
dmlond/mongo_agent_split_raw
Ruby MongoAgent::Agent that wraps dmlond/split_raw
dmlond/mongo_agent_alignment
MongoAgent Next Generation Sequence Alignment
dmlond/mongo_agent
MongoAgent is a framework for creating distributed pipelines across many different servers, each using the same MongoDB as a control panel.
dmlond/rails-cluster-docker
System inspired by http://x-aeon.com/wp/2014/02/05/rails-cluster-with-ruby-load-balancer-using-docker for more info.
dmlond/Intro-To-Docker
"Do Your Own Docker"
dmlond/bwa_samtools_base
base image FROM which other docker_bwa_aligner container applications start
dmlond/split_agent
google_agent_base extension container application to automate parallel alignments using a ruby spreadsheet_agent system
dmlond/split_raw
docker container to split a raw fastq file into subsets with a set number of entries for parallel alignments
dmlond/google_agent_base
intermediary container definition for turning a docker application into a ruby spreadsheet_agent wrapped application
dmlond/bwa_reference
docker container application to add publicly available reference files to a dmlond/bwa_reference_volume container
dmlond/bwa_reference_volume
docker volume container to hold reference genomes for use with dmlond/bwa_aligner
dmlond/bwa_plasmodium_data
Public repository.
dmlond/bwa_aligner_agent
an extension to dmlond/bwa_aligner which runs it as a ruby spreadsheet_agent
dmlond/bwa_aligner
docker container to run a bwa_alignment
dmlond/reproducible-research-anecdotes
Public repository.
dmlond/docker_bwa_aligner
Docker containers that demonstrate a proof of concept bwa alignment workflow
dmlond/gridz
Python Flask Web Application for Federated Data Wharehouses
dmlond/spreadsheet_agent
SpreadsheetAgent is a framework for creating massively distributed pipelines across many different servers, each using the same google spreadsheet as a control panel
dmlond/bwa_google_spreadsheet_agent
Basic bwa alignment agents for aws_google_spreadsheet_agent_base
dmlond/aws_google_spreadsheet_agent_base
Basic setup to use Google::Spreadsheet::Agents on an AWS Amazon AMI
dmlond/biosql-phylotools
tools for biosql for Phyloinf09 participants
dmlond/dmlond_test
This is a test of the GitHub Response System