dariogf/use_case_diagram
Ruby gem that parses a simple grammar to create use case diagrams with dot
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dariogf
Discovered public repositories for dariogf in the GitHub catalog.
dariogf/scbi_fqbin
FastQ and FASTA compression algorithm
dariogf/alignminer
A command line and web tool to search for divergent regions in multiple-sequence-alignment files
dariogf/scbi_testcode
A Ruby gem implementing Testcode algorithm to determine if a sequence is coding or not
dariogf/scbi_math
A Ruby gem with additional stats functions for NArray
dariogf/scbi_headers
A Ruby gem to print custom text headers on command line apps
dariogf/scbi_ace
A Ruby gem to handle ACE files
dariogf/scbi_distributed_blast
A distributed wrapper for BLAST+ based on scbi_mapreduce
dariogf/scbi_fasta
a Ruby gem to handle FASTA files
dariogf/scbi_plot
A Ruby gem to handle gnuplot
dariogf/scbi_queue_system
A simple queue system for controlled jobs
dariogf/scbi_fastq
A Ruby gem to handle FASTQ files
dariogf/SeqtrimNext
SeqtrimNEXT is a customizable and distributed pre-processing software for NGS (Next Generation Sequencing) biological data. It makes use of scbi_mapreduce gem to be able to run in parallel and distributed environments. It is specially suited for Roche 454 (normal and paired-end) & Ilumina datasets, although it could be easyly adapted to any other situation.
dariogf/scbi_map_reduce
scbi_mapreduce brings parallel and distributed computing capabilities to your code, with a very easy to use framework that allows you to exploit your clustered or cloud computational resources.
dariogf/scbi_blast
Gem to handle Blast+ within ruby without temporary files