cbg-ethz/PrimerID
Here we analyse the PrimerID protocol in all its gory details.
Developer Profile
cbg-ethz
Discovered public repositories for cbg-ethz in the GitHub catalog.
cbg-ethz/gespeR
Gene-Specific Phenotype EstimatoR
cbg-ethz/5-virus-mix
Benchmarking data sets for haplotype reconstruction methods, sequenced with Illumina MiSeq, 454/Roche GSJunior, and Pacific Biosciences
cbg-ethz/QuasiFit
QuasiFit is a Bayesian MCMC sampler for inferring fitness landscapes in the quasispecies model subject to mutation-selection equilibrium.
cbg-ethz/ConsensusFixer
Computes a consensus sequence with wobbles, ambiguous bases, and in-frame insertions, from a NGS read alignment.
cbg-ethz/haploclique
Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletions from NGS data.
cbg-ethz/shorah
Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)
cbg-ethz/InDelFixer
Iterative and very sensitive Next-Generation Sequencing (NGS) sequence alignment software. Accounting for large deletions and removes indels, causing frame shifts. In addition, only specific regions can be considered.
cbg-ethz/QuasiRecomb
Probabilistic inference of viral quasispecies subject to recombination (viral haplotype reconstruction).