tomfy/mcmc_toy
MCMC and MCMCMC. Space is [0..N]^d , proposals are symmetric.
Perl modules and scripts to analyze gene families and find orthologs by aligning, constructing trees, rooting them by mindl wrt a given species tree, and identifying speciation nodes of tree.
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MCMC and MCMCMC. Space is [0..N]^d , proposals are symmetric.
A version of MrBayes (starting from 3.2.4) with some features added by me.
Public repository.
perl modules and scripts for running mrbayes and analyzing output.