Modified versions of HMMER 3 programs to implement interoperability with galosh profiles (as generated by profillic).
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This is a version of Paul's profillic-hmmer-3_1 modified to use profuse alignment profiles instead of prolific profiles. Several of the header files on which it depends are modified, so the git root starts above the profillic-hmmer root.
Simulations and tests of profillic/hmmer routines