A simulator for SBML networks
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The ninox-maven-plugin shall allow one to build OBO or OWL ontologies. It is intended to be a wrapper for OOrt of the owltools project, but bringing the features of Maven namely structure by convention, dependency resolution, modularity, testing, and deploying also to ontology development.
Olaf Barthel's clib2 project from https://sourceforge.net/projects/clib2/ with few changes
The zeno-maven-plugin shall allow one to build simple Eclipse JDT projects via Maven without the need to turn the projects into full Eclipse Maven projects. It is thus similar to Tycho, which however targets especially Eclipse plugins and features.
Ontologizer is a tool for identifying enriched Gene Ontology terms in lists of names of genes or gene products.