rob-p/quip
Compressing next-generation sequencing data with extreme prejudice.
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Discovered Sep 24, 2026
rob-p / scala-utils
A random assortment of utilities for the Scala Language that I use in my projects
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More from rob-p
rob-p/Jellyfish
Fork of the jellyfish kmer counter. Here is the description copied from their site: JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism. JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish stats" command. See the documentation below for more details.
rob-p/course
Source code for the applications presented in the course "Geometry Processing with Discrete Exterior Calculus"
rob-p/cpp11fun
A small set of examples demonstrating features of C++11