retopara/nupic.research
Experimental algorithms. Unsupported.
TDVP_cyg
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Experimental algorithms. Unsupported.
Matlab/Octave toolbox for deep learning. Includes Deep Belief Nets, Stacked Autoencoders, Convolutional Neural Nets, Convolutional Autoencoders and vanilla Neural Nets. Each method has examples to get you started.
USTC-Software main project for iGEM 2012. REBORN: Reverse Engineering for BiOlogical Regulatory Networks.
a rule-based modeling approach for synthetic biology under development