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MzidLib - A library of routines for manipulating data in the PSI's mzIdentML standard. ProteoAnnotator is a completely automated software pipeline for integration of mass spectrometry (MS) based proteomic evidence into genome databases.
tranSMART pipeline alternative to ETL, using Spring Batch
Galaxy tools and wrappers for sequence analysis
OBiBa’s core database application for biobanks or epidemiological studies.