pasted/variant_reporting
Parsing of Alamut and GATK base-by-base coverage files to produce Excel reports for Clinical Scientists
A parallel workflow management application.
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Parsing of Alamut and GATK base-by-base coverage files to produce Excel reports for Clinical Scientists
Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensembl dataset. Originally developed as part of a Masters in Bioinformatics project @ University of Exeter
Rough Biomart example generating Interval Lists from transcript Ids
A ruby API for interacting with Biomart services