mlinderm/practicalgenomics
Public repository.
Memory efficient clustering in R for large datasets
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Public repository.
Lesson on Getting to Know Your Data for genomics
GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only
A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.